<?xml version="1.0" encoding="ISO-8859-1"?><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<front>
<journal-meta>
<journal-id>1659-4266</journal-id>
<journal-title><![CDATA[Cuadernos de Investigación UNED]]></journal-title>
<abbrev-journal-title><![CDATA[Cuadernos de Investigación UNED]]></abbrev-journal-title>
<issn>1659-4266</issn>
<publisher>
<publisher-name><![CDATA[Universidad Estatal a Distancia de Costa Rica]]></publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id>S1659-42662022000100014</article-id>
<article-id pub-id-type="doi">10.22458/urj.v14i1.3713</article-id>
<title-group>
<article-title xml:lang="en"><![CDATA[Phylogenetic relationships of a rabies virus isolate in Costa Rica]]></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Castro-Rodríguez]]></surname>
<given-names><![CDATA[Luis]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[León]]></surname>
<given-names><![CDATA[Bernal]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Ramírez-Carvajal]]></surname>
<given-names><![CDATA[Lisbeth]]></given-names>
</name>
<xref ref-type="aff" rid="Aff"/>
</contrib>
</contrib-group>
<aff id="Af1">
<institution><![CDATA[,National University School of Biological Sciences ]]></institution>
<addr-line><![CDATA[Heredia ]]></addr-line>
<country>Costa Rica</country>
</aff>
<aff id="Af2">
<institution><![CDATA[,National Technical University (UTN) National Veterinary Services Laboratory (LANASEVE) ]]></institution>
<addr-line><![CDATA[Heredia ]]></addr-line>
<country>Costa Rica</country>
</aff>
<aff id="Af3">
<institution><![CDATA[,University of Utrecht Department of Veterinary Medicine Infection and immunity ]]></institution>
<addr-line><![CDATA[Utrecht ]]></addr-line>
<country>Netherlands</country>
</aff>
<pub-date pub-type="pub">
<day>00</day>
<month>06</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="epub">
<day>00</day>
<month>06</month>
<year>2022</year>
</pub-date>
<volume>14</volume>
<numero>1</numero>
<copyright-statement/>
<copyright-year/>
<self-uri xlink:href="http://www.scielo.sa.cr/scielo.php?script=sci_arttext&amp;pid=S1659-42662022000100014&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.sa.cr/scielo.php?script=sci_abstract&amp;pid=S1659-42662022000100014&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.sa.cr/scielo.php?script=sci_pdf&amp;pid=S1659-42662022000100014&amp;lng=en&amp;nrm=iso"></self-uri><abstract abstract-type="short" xml:lang="en"><p><![CDATA[ABSTRACT Introduction: The sylvatic cycle of rabies is a significant sanitary burden in Central America. The Costa Rican government monitors cases since 1985 and infections from bats are still reported for wild animals, livestock, and humans, generating a need of further pathogen characterization in the region. Objective: To compare rabies phylogenetic analyses from complete genomes with nucleoprotein gene studies. Methods: For the phylogenetic analyses we used four rabies tissue samples collected in 2018, and generated complete genomes by Next-Generation sequencing (NGS). We also extracted RNA from tissues of confirmed cases and generated ssDNA using several primers. Double-stranded DNA was generated and used to generate genomic libraries. Results: We describe, for the first-time, the complete genome of four sequences of the rabies virus isolated in Costa Rica in 2018. Complete genome trees resembled the topology of nucleoprotein gene trees. All isolates were related to Desmodus rotundus. One sample group into Lineage (L)2, and the remaining samples group in L1, matched previous reports from regional rabies viruses. Conclusion: Our method produces valid viral assemblies from clinical specimens without target enrichment or viral isolation.]]></p></abstract>
<abstract abstract-type="short" xml:lang="es"><p><![CDATA[RESUMEN ''Relaciones filogenéticas de un virus de la rabia aislado en Costa Rica''. Introducción: En Centroamérica, el ciclo selvático de la rabia es una carga sanitaria importante. El gobierno de Costa Rica monitorea los casos desde 1985 y aún se reportan infecciones por murciélagos en animales silvestres, ganado y humanos, lo que genera la necesidad de una mayor caracterización de estos patógenos en la región. Objetivo: Comparar análisis filogenéticos de rabia de genomas completos con estudios de genes de nucleoproteínas. Métodos: Para los análisis filogenéticos, utilizamos cuatro muestras de tejido antirrábico recolectadas en 2018 y generamos genomas completos mediante secuenciación de próxima generación (NGS). También extrajimos ARN de tejidos de casos confirmados y generamos ADNss utilizando varios cebadores. Se generó ADN de doble hebra y se utilizó para generar bibliotecas genómicas. Resultados: Describimos, por primera vez, el genoma completo de cuatro secuencias del virus de la rabia aisladas en Costa Rica en 2018. Los árboles del genoma completo se asemejaban a la topología de los árboles de genes de nucleoproteínas. Todos los aislamientos estaban relacionados con Desmodus rotundus. Un grupo de muestra en Lineage (L) 2, y el grupo de muestras restante en L1, coincidió con informes anteriores de virus de rabia regionales. Conclusión: Nuestro método produce ''ensamblajes'' virales válidos a partir de muestras clínicas sin enriquecimiento previo y sin aislamiento viral.]]></p></abstract>
<kwd-group>
<kwd lng="en"><![CDATA[phylogenetic analysis]]></kwd>
<kwd lng="en"><![CDATA[Next-generation sequencing (NGS)]]></kwd>
<kwd lng="en"><![CDATA[lineage]]></kwd>
<kwd lng="en"><![CDATA[Desmodus rotundus]]></kwd>
<kwd lng="en"><![CDATA[Costa Rica]]></kwd>
<kwd lng="es"><![CDATA[Análisis filogenéticos]]></kwd>
<kwd lng="es"><![CDATA[secuenciación de nueva generación (NGS)]]></kwd>
<kwd lng="es"><![CDATA[linaje]]></kwd>
<kwd lng="es"><![CDATA[Desmodus rotundus]]></kwd>
<kwd lng="es"><![CDATA[Costa Rica]]></kwd>
</kwd-group>
</article-meta>
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