<?xml version="1.0" encoding="ISO-8859-1"?><article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<front>
<journal-meta>
<journal-id>0034-7744</journal-id>
<journal-title><![CDATA[Revista de Biología Tropical]]></journal-title>
<abbrev-journal-title><![CDATA[Rev. biol. trop]]></abbrev-journal-title>
<issn>0034-7744</issn>
<publisher>
<publisher-name><![CDATA[Universidad de Costa Rica]]></publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id>S0034-77442012000800018</article-id>
<title-group>
<article-title xml:lang="en"><![CDATA[High genotypic diversity of the reef-building coral Porites lobata (Scleractinia: Poritidae) in Isla del Coco National Park, Costa Rica]]></article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Boulay]]></surname>
<given-names><![CDATA[Jennifer N.]]></given-names>
</name>
<xref ref-type="aff" rid="A01"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Cortés]]></surname>
<given-names><![CDATA[Jorge]]></given-names>
</name>
<xref ref-type="aff" rid="A02"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Nivia-Ruiz]]></surname>
<given-names><![CDATA[Jaime]]></given-names>
</name>
<xref ref-type="aff" rid="A02"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname><![CDATA[Baums]]></surname>
<given-names><![CDATA[Iliana B.]]></given-names>
</name>
<xref ref-type="aff" rid="A01"/>
</contrib>
</contrib-group>
<aff id="A01">
<institution><![CDATA[,The Pennsylvania State University Department of Biology ]]></institution>
<addr-line><![CDATA[ Pennsylvania]]></addr-line>
<country>USA</country>
</aff>
<aff id="A02">
<institution><![CDATA[,Universidad de Costa Rica Centro de Investigación en Ciencias del Mar y Limnología (CIMAR) ]]></institution>
<addr-line><![CDATA[San Pedro San José]]></addr-line>
<country>Costa Rica</country>
</aff>
<pub-date pub-type="pub">
<day>00</day>
<month>11</month>
<year>2012</year>
</pub-date>
<pub-date pub-type="epub">
<day>00</day>
<month>11</month>
<year>2012</year>
</pub-date>
<volume>60</volume>
<fpage>279</fpage>
<lpage>292</lpage>
<copyright-statement/>
<copyright-year/>
<self-uri xlink:href="http://www.scielo.sa.cr/scielo.php?script=sci_arttext&amp;pid=S0034-77442012000800018&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.sa.cr/scielo.php?script=sci_abstract&amp;pid=S0034-77442012000800018&amp;lng=en&amp;nrm=iso"></self-uri><self-uri xlink:href="http://www.scielo.sa.cr/scielo.php?script=sci_pdf&amp;pid=S0034-77442012000800018&amp;lng=en&amp;nrm=iso"></self-uri><abstract abstract-type="short" xml:lang="en"><p><![CDATA[The isolated Isla del Coco experiences periodic, extreme disturbances which devastate coral reefs surrounding the island. Scleractinian corals build the physical structure of the reef therefore ecosystem recovery relies on coral species recovery. Coral recruits can be of sexual or asexual origin, and the relative success of the two recruit types influences the speed and spread of recovery processes. Here we focus on the massive coral, Porites lobata, because it is the main reef-builder around Isla del Coco to describe the relative contribution of asexual and sexual recruits to population maintenance. P. lobata samples were collected using a spatially explicit random sampling design in three plots at Isla del Coco: Punta Ulloa (n=17), Bahía Weston (n=20) and Punta María (n=20) and samples were genotyped with 11 microsatellite markers. Additional sampling was conducted at three &#8220;coastal&#8221; sites near the Costa Rican mainland (Isla del Caño Biological Reserve): Caño1 (n=8), Caño2 (n=10), Caño5 (n=11) to compare the contributions of asexual and sexual recruits at Isla del Coco sites to coastal sites. Isla del Coco sites were characterized by small colony size (&gt;60% of colonies <0.5m2) and high sexual reproduction. Sites were either mostly or entirely sexual,consisting of only unique genotypes (N G/N= 0.90-1.00; G O/G E=0.83-1.00; D=0.99-1.00). Although there were no significant differences in genetic diversity (number of alleles per locus, number of private alleles) or colony size between Isla del Coco and the coastal sites, the coastal sites exhibited a greater range of genotypic diversity from moderately asexual (N G/N=0.5; G O/G E=0.36; D=0.8) to purely sexual (N G/N=1.0; G O/G E=1.0; D=1.0). The mode of asexual reproduction in P. lobata is likely fragmentation of adult colonies rather than asexual larval production because ramets of P. lobata occurred close together and asexually produced larvae have not been reported in gonochoric broadcast spawners like P. lobata. Frequent sexual reproduction at Isla del Coco National Park might represent a resource for rapid recovery following extreme El Niño-Southern Oscillation (ENSO) disturbance events. In contrast, larger, asexually-produced fragments rather than smaller, sexually-produced larvae appear to have the advantage at some coastal sites. The high frequency of sexual reproduction at Isla del Coco indicates that not only are sexual partners available but also current conditions are favorable for the delivery of larvae and the rate of predation on small larval recruits must be moderate.]]></p></abstract>
<abstract abstract-type="short" xml:lang="es"><p><![CDATA[Los ambientes marinos del Parque Nacional Isla del Coco experimentan perturbaciones extremas periódicamente como por ejemplo El Niño-Oscilación del Sur (ENOS) que han devastado las comunidades coralinas. La cobertura coralino se redujo drásticamente durante El Niño de 1982-83. Los corales escleractinios construyen la estructura física de los arrecifes así que la recuperación de estos ecosistemas depende de que los corales se recuperen. Los corales pueden reproducirse sexual y asexualmente, y el éxito relativo de cada forma de reproducción va a guiar el proceso de recuperación con implicaciones potenciales a la diversidad de las comunidades asociadas. En la mayoría de los arrecifes alrededor de la Isla del Coco, el coral masivo, Porites lobata, es la especie constructora predominante. Si la diversidad genotípica (clonal) de esta especie es alta, la diversidad de individuos va a ser más alta resultando en mayor resilencia frente a condiciones ambientales extremas. Alternativamente, una diversidad genotípica baja es indicativo de una estrategia reproductiva asexual posiblemente resultando en el mantenimiento de genotipos bien adaptados aunque la población decline. Aquí, usamos 11 marcadores microsatélite para investigar la contribución relativa de la reproducción sexual o asexual en la recuperación de los arrecifes en el Parque Nacional Isla del Coco. En la Isla del Coco se recolectaron muestras en: Punta Ulloa (n=17), Bahía Weston (n=20) y Punta María (n=20), y para comparar, se recolectaron muestras en localidades cerca de o en la costa continental de Costa Rica; Reserva Biológica Isla del Caño: Caño1 (n=8), Caño2 (n=10) y Caño5 (n=11), y Tres Hermanas, Parque Nacional Marino Ballena (n=4), utilizando un diseño de muestreo espacialmente explícito. Las colonias de la Isla del Coco son generalmente pequeñas (&gt;60% de las colonias <0.5m2) y se observó poca reproducción asexual. En la mayoría de los sitios la reproducción era mayormente sexual (NG/N= 0.90-0.94; GO/GE =0.63-0.74; D=0.99) o totalmente sexual (N G/N= 1.0; G O/G E =1.0; D=1.0), por lo que consiste decolonias con genotipos únicos. En contraste, los sitios costeros tenían un ámbito de predominantemente asexual y genotípicamente pobre (N G/N =0.5; G O/G E =0.11; D=0.5) a totalmente sexual (N G/N= 1.0; G O/G E =1.0; D=1.0). No hubo diferencia en diversidad genética (número de alelos por locus, número de alelos privados) o distribución de tamaño por región. La alta diversidad genotípica del Parque Nacional Isla del Coco indica reproducción sexual frecuente y el potencial para la recuperación rápida de los arrecifes después de perturbaciones severas. En los sitios costeros, la fragmentación asexual de colonias grandes (&gt;2.5m2) y por lo tanto, potencialmente colonias bien adaptadas, puede aumentar las resistencia y resilencia de los sistemas.]]></p></abstract>
<kwd-group>
<kwd lng="en"><![CDATA[Genotypic diversity]]></kwd>
<kwd lng="en"><![CDATA[Porites lobata]]></kwd>
<kwd lng="en"><![CDATA[Eastern Tropical Pacific]]></kwd>
<kwd lng="en"><![CDATA[Scleractinian coral]]></kwd>
<kwd lng="en"><![CDATA[fragmentation]]></kwd>
<kwd lng="en"><![CDATA[Isla del Coco]]></kwd>
<kwd lng="en"><![CDATA[Costa Rica]]></kwd>
</kwd-group>
</article-meta>
</front><body><![CDATA[ <div style="text-align: justify;">     <div style="text-align: center;"><font  style="font-family: verdana; font-weight: bold;" size="4">High genotypic diversity of the reef-building coral </font><font  style="font-family: verdana;" size="4"><span  style="font-style: italic;">Porites lobata</span> <span style="font-weight: bold;">(Scleractinia: Poritidae) in Isla del Coco National Park, Costa Rica</span></font><br  style="font-weight: bold;"> </div>     <br>     <div style="text-align: center;"><font style="font-family: verdana;"  size="2">Jennifer N. Boulay<sup><a href="#1">1</a><a name="3"></a>*</sup>, Jorge Cort&eacute;s<sup><a href="#2">2</a><a name="4"></a>*</sup>, Jaime Nivia-Ruiz<a href="#2"><sup>2</sup></a> &amp; Iliana B. Baums<a href="#1"><sup>1</sup></a></font>    <br> </div>     <br> <font style="font-family: verdana;" size="-1"><a name="Correspondencia2"></a>*<a  href="#Correspondencia1">Direcci&oacute;n para correspondencia:</a></font>    <br> <hr style="width: 100%; height: 2px;"><font  style="font-family: verdana; font-weight: bold;" size="3">Abstract</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">The isolated Isla del Coco experiences periodic, extreme disturbances which devastate coral reefs surrounding the island. Scleractinian corals build the physical structure of the reef therefore ecosystem recovery relies on coral species recovery. Coral recruits can be of sexual or asexual origin, and the relative success of the two recruit types influences the speed and spread of recovery processes. Here we focus on the massive coral, <span style="font-style: italic;">Porites lobata</span>, because it is the main reef-builder around Isla del Coco to describe the relative contribution of asexual and sexual recruits to population maintenance. <span  style="font-style: italic;">P. lobata </span>samples were collected using a spatially explicit random sampling design in three plots at Isla del Coco: Punta Ulloa (n=17), Bah&iacute;a Weston (n=20) and Punta Mar&iacute;a (n=20) and samples were genotyped with 11 microsatellite markers. Additional sampling was conducted at three &#8220;coastal&#8221; sites near the Costa Rican mainland (Isla del Ca&ntilde;o Biological Reserve): Ca&ntilde;o1 (n=8), Ca&ntilde;o2 (n=10), Ca&ntilde;o5 (n=11) to compare the contributions of asexual and sexual recruits at Isla del Coco sites to coastal sites. Isla del Coco sites were characterized by small colony size (&gt;60% of colonies &lt;0.5m<sup>2</sup>) and high sexual reproduction. Sites were either mostly or entirely sexual,consisting of only unique genotypes (N<sub>G</sub>/N= 0.90-1.00; G<sub>O</sub>/G<sub>E</sub>=0.83-1.00; D=0.99-1.00). Although there were no significant differences in genetic diversity (number of alleles per locus, number of private alleles) or colony size between Isla del Coco and the coastal sites, the coastal sites exhibited a greater range of genotypic diversity from moderately asexual (N<sub>G</sub>/N=0.5; G<sub>O</sub>/G<sub>E</sub>=0.36; D=0.8) to purely sexual (N<sub>G</sub>/N=1.0; G<sub>O</sub>/G<sub>E</sub>=1.0; D=1.0). The mode of asexual reproduction in <span style="font-style: italic;">P. lobata </span>is likely fragmentation of adult colonies rather than asexual larval production because ramets of <span  style="font-style: italic;">P. lobata </span>occurred close together and asexually produced larvae have not been reported in gonochoric broadcast spawners like <span  style="font-style: italic;">P. lobata.</span> Frequent sexual reproduction at Isla del&nbsp; Coco National Park might represent a resource for rapid recovery following extreme&nbsp; El Ni&ntilde;o-Southern Oscillation (ENSO) disturbance events. In contrast, larger,&nbsp; asexually-produced fragments rather than smaller, sexually-produced larvae appear to have the advantage at some coastal sites. The high frequency of sexual reproduction at Isla del Coco indicates that not only are sexual partners available but also current conditions are favorable for the delivery of larvae and the rate of predation on small larval recruits must be moderate. </font>    <br> <font style="font-family: verdana;" size="2"></font>    ]]></body>
<body><![CDATA[<br> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Key words:</span> Genotypic diversity, <span  style="font-style: italic;">Porites lobata</span>, Eastern Tropical Pacific, Scleractinian coral, fragmentation, Isla del Coco, Costa Rica.</font>    <br> <font style="font-family: verdana;" size="2"></font><br  style="font-weight: bold;"> <font style="font-family: verdana; font-weight: bold;" size="3">Resumen</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">Los&nbsp; ambientes&nbsp; marinos&nbsp; del&nbsp; Parque&nbsp; Nacional&nbsp; Isla del Coco experimentan&nbsp; perturbaciones extremas peri&oacute;dicamente&nbsp; como por ejemplo El Ni&ntilde;o-Oscilaci&oacute;n del&nbsp; Sur (ENOS)&nbsp; que&nbsp; han&nbsp; devastado&nbsp; las&nbsp; comunidades&nbsp; coralinas. La cobertura coralino&nbsp; se redujo dr&aacute;sticamente durante El Ni&ntilde;o de 1982-83. Los corales escleractinios construyen la estructura f&iacute;sica de los arrecifes as&iacute; que la recuperaci&oacute;n de estos ecosistemas depende de que los corales se recuperen. Los corales pueden reproducirse sexual y asexualmente, y el &eacute;xito relativo de cada forma de reproducci&oacute;n va a guiar el proceso de recuperaci&oacute;n con implicaciones potenciales a la diversidad de las comunidades asociadas. En la mayor&iacute;a de los arrecifes alrededor de la Isla del Coco, el coral masivo, <span  style="font-style: italic;">Porites lobata</span>, es la especie constructora predominante. Si la diversidad genot&iacute;pica (clonal) de esta especie es alta, la diversidad de individuos va a ser&nbsp; m&aacute;s alta resultando en&nbsp; mayor&nbsp; resilencia&nbsp;&nbsp; frente&nbsp; a&nbsp; condiciones&nbsp; ambientales extremas.&nbsp; Alternativamente,&nbsp; una&nbsp; diversidad&nbsp;&nbsp; genot&iacute;pica baja es indicativo de una&nbsp; estrategia&nbsp; reproductiva asexual posiblemente resultando en el mantenimiento de genotipos bien adaptados aunque la poblaci&oacute;n decline. Aqu&iacute;, usamos 11 marcadores microsat&eacute;lite para investigar la contribuci&oacute;n relativa de la reproducci&oacute;n sexual o asexual en la recuperaci&oacute;n de los arrecifes en el Parque Nacional Isla del Coco. En la Isla&nbsp; del Coco se recolectaron muestras en:&nbsp; Punta Ulloa (n=17), Bah&iacute;a Weston (n=20) y Punta Mar&iacute;a (n=20), y para comparar, se&nbsp; recolectaron muestras en localidades cerca de o en la costa continental de Costa Rica; Reserva Biol&oacute;gica Isla del Ca&ntilde;o: Ca&ntilde;o1&nbsp; (n=8), Ca&ntilde;o2 (n=10) y Ca&ntilde;o5 (n=11), y Tres Hermanas, Parque Nacional Marino Ballena&nbsp; (n=4),&nbsp; utilizando&nbsp; un&nbsp; dise&ntilde;o&nbsp; de&nbsp; muestreo&nbsp; espacialmente expl&iacute;cito. Las colonias de la&nbsp; Isla del Coco son generalmente peque&ntilde;as&nbsp; (&gt;60% de las colonias &lt;0.5m<sup>2</sup>) y se observ&oacute;&nbsp; poca reproducci&oacute;n asexual. En la mayor&iacute;a de los sitios la reproducci&oacute;n era mayormente sexual (N<sub>G</sub>/N=&nbsp; 0.90-0.94; G<sub>O</sub>/G<sub>E</sub>&nbsp; =0.63-0.74; D=0.99) o totalmente sexual (N<sub>G</sub>/N=&nbsp; 1.0; G<sub>O</sub>/G<sub>E</sub>&nbsp; =1.0;&nbsp; D=1.0), por lo que&nbsp; consiste decolonias&nbsp; con&nbsp; genotipos&nbsp; &uacute;nicos.&nbsp; En&nbsp; contraste,&nbsp; los&nbsp; sitios costeros ten&iacute;an un &aacute;mbito de predominantemente asexual y genot&iacute;picamente pobre (N<sub>G</sub>/N =0.5; G<sub>O</sub>/G<sub>E</sub> =0.11; D=0.5) a totalmente sexual (N<sub>G</sub>/N= 1.0; G<sub>O</sub>/G<sub>E</sub>&nbsp; =1.0; D=1.0). No hubo diferencia en diversidad gen&eacute;tica (n&uacute;mero de alelos por locus, n&uacute;mero de alelos privados)&nbsp; o distribuci&oacute;n de tama&ntilde;o por regi&oacute;n. La alta diversidad genot&iacute;pica del Parque Nacional Isla del Coco indica reproducci&oacute;n sexual frecuente y el potencial para la recuperaci&oacute;n r&aacute;pida de los arrecifes despu&eacute;s de perturbaciones severas. En los sitios costeros, la fragmentaci&oacute;n asexual de colonias grandes (&gt;2.5m<sup>2</sup>) y por lo tanto, potencialmente&nbsp; colonias bien adaptadas, puede aumentar las resistencia y resilencia de los sistemas.</font>    <br> <hr style="width: 100%; height: 2px;"><font  style="font-family: verdana;" size="2">Corals build the three-dimensional habitat of the reef ecosystem and thus act as foundation fauna (Bruno &amp; Bertness 2001). Scleractinian corals often have large geographic distributions and encounter steep environmental gradients across their ranges (Maina <span  style="font-style: italic;">et al.</span> 2011). For example, marginal environments at the edges of coral species&#8217; ranges are characterized bylow species diversity and adverse environmental conditions (Veron 2000, Maina <span style="font-style: italic;">et al.</span> 2011, Polidoro <span style="font-style: italic;">et al.</span> 2012) yet, coral populations persist. In the Eastern Tropical Pacific (ETP), coral species diversity is lower than in the central, Indo-West Pacific region (Wells 1988, Glynn &amp; Ault 2000) and environmental conditions are suboptimal for reef growth because of the limited shallow water habitat, fluctuating seawater temperatures due to seasonal upwelling, high sedimentation rates and low aragonite saturation state (Cort&eacute;s 1997, Glynn &amp; Ault 2000, Maina <span  style="font-style: italic;">et al.</span> 2011, Polidoro <span style="font-style: italic;">et al.</span> 2012). Further, a 5000-8000km deep water barrier (Dana 1975, Grigg &amp; Hey 1992) now separates tropical eastern Pacific biotas from the Indo-West Pacific region. Darwin (1880) regarded this eastern Pacific barrier as &#8220;impassable&#8221;, and Ekman (1953) concluded that it is the world&#8217;s most potent marine barrier to larval dispersal. The combination of suboptimal environmental conditions and isolation has raised interest to understand how these reefs face adverse conditions. Because climate change is expected to increase environmental variability and decrease species diversity in more central locations (Hughes&nbsp; <span style="font-style: italic;">et&nbsp; al.</span>&nbsp; 2003,&nbsp; Hoegh-Guldberg&nbsp; <span style="font-style: italic;">et&nbsp; al.</span> 2007), investigating how coral populations persist in marginal habitats provides insights for the future of reefs.</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">Many coral species can maintain their populations via both sexual and asexual reproduction however, the relative importance of asexual and sexual reproduction can vary across&nbsp; coral species&nbsp; ranges&nbsp; (Stoddart 1984a, Baums <span style="font-style: italic;">et al.</span> 2006) and be influenced by biotic and abiotic factors (Glynn <span style="font-style: italic;">et al.</span> 1994, Legoff <span style="font-style: italic;">et al.</span> 2004, Foster <span style="font-style: italic;">et al.</span> 2007). Sexual reproduction in corals occurs via the release of either sperm alone (sperm casting) or the release of eggs and sperm (broadcast spawning) into the water column. Sexes can be separate (gonochorism) or together (hermaphroditism). Asexual reproductive modes are just as varied ranging from&nbsp; the&nbsp; release&nbsp; of&nbsp; asexual&nbsp; larvae,&nbsp; gemmae and polyps to fragmentation of adult colonies. Fragmentation is common in branching species such as <span style="font-style: italic;">Acropora</span> but generally thought to be rare in massive species, with notable exceptions such as <span  style="font-style: italic;">Montastraea</span> <span  style="font-style: italic;">annularis</span> (Foster <span style="font-style: italic;">et al.</span> 2007). The amount of sexual versus asexual recruitment in a population is directly proportional to the genotypic diversity (the number of distinct genets or clones) of a population. Thus, the genotypic diversity in a population gives an indication of the relative importance of asexual versus sexual reproduction to population maintenance.</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">The relative importance of sexual versus asexual reproduction to population maintenance&nbsp; has&nbsp; consequences&nbsp; for&nbsp; the&nbsp; resistance and resilience of populations. While asexual reproduction of potentially well adapted local genotypes allows for the persistence of populations in the absence of sexual partners and/or favorable conditions for larval recruits, genotypically depauperate populations are expected to be less resilient to abiotic and biotic disturbances (red queen hypothesis, Lively <span  style="font-style: italic;">et al.</span> 1990, Reusch <span  style="font-style: italic;">et al.</span> 2005). It is thus important to determine the levels of genotypic (and genetic) diversity of coral populations. Decreased levels&nbsp; of&nbsp; genotypic&nbsp; diversity&nbsp; in&nbsp; corals&nbsp; have been described in areas of intermediate and increased natural and anthropogenic disturbances (Hunter 1993, Coffroth &amp; Lasker 1998) and regions with lower connectivity among populations of corals (Baums <span style="font-style: italic;">et al.</span> 2006). At the edge of a species&#8217; range, asexually produced coral colonies can dominate local populations of lower density compared to the center of the range (reviewed in Baums 2008), maybe due to the rarity of sexual partners. Concordantly, clonal reproduction was more frequent in marginal than central habitats for at least two species: <span style="font-style: italic;">Acropora palmata</span> (Baums <span  style="font-style: italic;">et al.</span> 2006) and <span  style="font-style: italic;">Pocillopora damicornis</span> (Stoddart 1984a, 1984b, Miller &amp; Ayre 2004). In <span  style="font-style: italic;">P. damicornis</span> (Type I), an important reef builder in the Eastern Pacific, there is evidence of both sexual and asexual reproduction in the northern ETP but no information exists for the center of the range (Pinz&oacute;n <span  style="font-style: italic;">et al.</span> 2012). Similarly, the importance of asexual versus sexual reproduction has not been determined for <span style="font-style: italic;">Porites lobata</span> Dana, 1846, despite its prominent role as foundation fauna on Eastern Pacific sites such as the reefs of Isla del Coco.</font>    <br> <font style="font-family: verdana;" size="2"></font>    ]]></body>
<body><![CDATA[<br> <font style="font-family: verdana;" size="2">Isla&nbsp; del&nbsp; Coco&nbsp; National&nbsp; Park&nbsp; (5&deg;32&#8217;N, 87&deg;04&#8217;W) is located approximately 500 km southwest of the Costa Rican mainland (<a href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1A</a>). The fringing reefs surrounding the island have the highest species richness of zooxanthellate corals among sites on the Pacific coast of Costa Rica (Guzman &amp; Cort&eacute;s 1992) but are dominated by few foundation species (Bakus 1975). Most of the reefs were constructed by <span style="font-style: italic;">Porites lobata</span> but the agariciids and Pavona spp. are also common (Cort&eacute;s <span style="font-style: italic;">et al.</span> 2010). Unlike mainland Costa Rica which is affected more regularly by anthropogenic disturbances, the remote location of Isla del Coco and its National Park status renders it less impacted by humans (as reviewed in Cort&eacute;s <span  style="font-style: italic;">et al.</span> 2010). However, natural disturbances in the form of El Ni&ntilde;o-Southern Oscillation (ENSO) events are very common in the waters around Isla del Coco (Cort&eacute;s 2008, Cort&eacute;s <span  style="font-style: italic;">et al.</span> 2010). As a result of the 1982-1983 ENSO event live coral cover was depleted to 2.6 to 3.5% (Guzman &amp; Cort&eacute;s 1992). But some recovery has been observed. In 2000, live coral cover had reached 59% at one Isla del Coco site (Guzman &amp; Cort&eacute;s 2007) despite punctuation by an additional severe bleaching event in 1996-1997. Hundreds of&nbsp; scientific&nbsp; papers&nbsp; have&nbsp; been&nbsp; published&nbsp; on the marine life at Isla del Coco mostly with a focus on taxonomy. In contrast, no known studies have been published on the dynamics of&nbsp; populations,&nbsp; behavior,&nbsp; or&nbsp; genetic&nbsp; makeup of any marine species on the island (Cort&eacute;s 2008). The periodic natural disturbances and marginal location of Isla del Coco combined with the dominance of few coral foundation species increase the importance of examining the relative importance of sexual versus asexual reproduction to population maintenance of foundation corals at Isla del Coco. Thus, we investigated the genetic and genotypic diversity of a dominant reef builder at Isla del Coco, P. lobata, at Isla del Coco National Park and contrast it with the diversity found at more coastal sites along the Costa Rican mainland.    <br>     <br> </font><font style="font-family: verdana; font-weight: bold;" size="3">Materials and Methods</font>    <br> <font style="font-family: verdana;" size="2"></font><font size="-1">    <br> </font><font style="font-family: verdana;" size="2"><font size="-1"><span  style="font-weight: bold;">Study species:</span></font> <span  style="font-style: italic;">Porites lobata</span> Dana, 1846 (Scleractinia: Poritidae) is a massive, slowgrowing, gonochoric, broadcast-spawning species, that also reproduces asexually by partial mortality or fish-induced fragmentation (Cort&eacute;s 1997). It has a Pacific-wide distribution and dominates reefs in lower latitudes of the ETP and on oceanic islands such as Isla del Coco (Glynn <span style="font-style: italic;">et al.</span> 1994, Guzman &amp; Cort&eacute;s 2007). In Costa Rica, it is the dominant reef-building coral (Cort&eacute;s &amp; Guzman 1998) constituting over 90% of the best developed reefs in the country, including Isla del Coco (Guzman &amp; Cort&eacute;s 1992), Isla del Ca&ntilde;o (Guzman &amp; Cort&eacute;s 1989), and Punta Islotes in Golfo Dulce (Cort&eacute;s 1992).</font>    <br> <font style="font-family: verdana;" size="2"></font><br  style="font-weight: bold;"> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Study sites:</span> <span  style="font-style: italic;">P. lobata </span>colonies were sampled in April 2010 at Punta Ulloa, Bah&iacute;a Weston and Punta Mar&iacute;a in Isla del Coco National Park, Costa Rica (&#8220;oceanic sites&#8221;). Colonies at Bah&iacute;a Weston and Punta Ulloa were located 4-7m deep. Punta Mar&iacute;a is a deeper site with <span style="font-style: italic;">P. lobata </span>colonies found 10-12m deep. For comparison, three inshore Costa Rican sites (&#8220;coastal sites&#8221;) were also sampled in Isla del Ca&ntilde;o Biological Reserve. These sites were designated Ca&ntilde;o1, Ca&ntilde;o2 and Ca&ntilde;o5.</font>    <br> <font style="font-family: verdana;" size="2"></font><br  style="font-weight: bold;"> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Sampling method:</span> The sampling design followed Baums <span style="font-style: italic;">et al.</span> (2006). Coral fragments were collected under randomly generated coordinates in 15m radius circular plots (<a href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1B-C</a>). One plot was sampled at each site (see Study Sites) for a total of three plots at Isla del Coco and three coastal plots. Coordinates had a precision of 5&deg; of arc and of 0.5m along strike and were generated using the random number generation function in Microsoft Excel. Using a compass and a measuring tape secured to the center point of the circle, coordinates were located by a team of SCUBA divers. The center of the plot was diver selected to maximize colony density and therefore sampling feasibility.&nbsp; The colony (defined as a mounding coral skeleton covered by continuous tissue growth) underneath each coordinate was sampled using a hammer and chisel to break off a small fragment&nbsp; of&nbsp; coral&nbsp; tissue&nbsp; (maximum&nbsp; size&nbsp; 1cm&nbsp; x 1cm). An&nbsp; underwater&nbsp; photograph&nbsp; was&nbsp; taken of each colony sampled for future reference, and&nbsp; each&nbsp; colony&#8217;s&nbsp; maximum&nbsp; length,&nbsp; width, and height was measured to the nearest 10cm. The same colony was never sampled twice and sampling of a plot ceased when 20 colonies were collected to standardize sampling effort. However,&nbsp; previously&nbsp; unknown&nbsp; cryptic&nbsp; species diversity within morphologically similar <span style="font-style: italic;">Porites </span>colonies was revealed by genotyping post-sampling (Boulay <span style="font-style: italic;">et al.</span> in prep) and reduced the sample sizes of <span style="font-style: italic;">P. lobata </span>in the Coastal plots and Punta Ulloa (see genotyping results for further discussion). Fragments were placed in individual zip-lock bags underwater and then transferred to vials containing 95% ethanol. Fragments were stored in a -20&deg;C freezer until DNA extraction and genetic analysis could be performed.</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Genotyping:</span> Genomic DNA was extracted following the manufacturer&#8217;s instructions using&nbsp; the&nbsp; DNeasy&nbsp; 96&nbsp; Blood&nbsp; and Tissue&nbsp; Kit (Qiagen, CA). Multilocus genotypes (MLGs) were established for each colony using a total of eleven microsatellite loci (<a href="/img/revistas/rbt/v60s3/a18a1.gif">Appendix Table 1</a>) that have been used in previous studies (Polato <span  style="font-style: italic;">et al.</span> 2010, Baums <span style="font-style: italic;">et al.</span> 2012). Polymerase chain reactions were run in four multiplex reactions consisting of two to three primer pairs each and one singleplex reaction. Primer sets were labeled with NED, VIC, PET, or 6FAM (Applied Biosystems, CA). PCR conditions consisted of an initial denaturation step of 95&deg;C for 5 min, followed by 35 cycles (95&deg;C for 20s; melting temperature of 52&deg;C-56&deg;C depending on&nbsp; the&nbsp; microsatellite&nbsp; for&nbsp; 20s;&nbsp; and&nbsp; 72&deg;C&nbsp; for 30s). A final extension of 30 min at 72&deg;C was used to ensure the addition of a terminal adenine to all products (Brownstein <span style="font-style: italic;">et al.</span> 1996). PCR products were visualized using an ABI3730 automated sequencer and internal size standards (Genescan LIZ-500; Applied Biosystems, CA) were used to determine the size of the products. Alleles were scored based on amplicon size using Genemapper 4.0 (Applied Biosystems, CA).</font>    <br> <font style="font-family: verdana;" size="2"></font><br  style="font-weight: bold;"> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Analysis of multi-locus genotype data:</span> Multi-locus genotypes (MLGs) were determined in GenAlEx vers 6.4 by requiring complete matches at all loci (Peakall &amp; Smouse 2006) ignoring missing alleles. Potential genotyping errors were detected with GenClone 2.0 (Arnaud-Haond&nbsp; &amp;&nbsp; Belkhir&nbsp; 2007)&nbsp; and&nbsp; spurious&nbsp; allele&nbsp; calls&nbsp; were&nbsp; corrected.&nbsp; Genotypic and genetic diversity indices were calculated. Genotypic diversity refers to the number of unique multi-locus genotypes and varies on the level of whole organisms. In contrast, genetic diversity measures allele diversity of individual loci in a population. Genotypic diversity indices such as genotypic richness (N<sub>G</sub>/N), genotypic diversity (G<sub>O</sub>/G<sub>E</sub>) and genotypic evenness&nbsp; (G<sub>O</sub>/N<sub>G</sub>)&nbsp; were&nbsp; calculated&nbsp; (<a href="/img/revistas/rbt/v60s3/a18t1.gif">Table&nbsp; 1)</a>&nbsp; for&nbsp; each site. Genotypic richness is directly proportional to the frequency of sexual recruitment and is calculated by dividing the number of unique genotypes&nbsp; (genets;&nbsp; N<sub>G</sub>)&nbsp; by&nbsp; the&nbsp; total&nbsp; number of samples (N). Genotypic diversity is calculated by dividing the observed (G<sub>O</sub>) over the expected&nbsp; (G<sub>E</sub>)&nbsp; genotypic&nbsp; diversity&nbsp; (Stoddart &amp; Taylor 1988). Microsatellites are highly polymorphic markers and thus each sample is expected to be genetically distinct in a sexually&nbsp; reproducing&nbsp; population.&nbsp; The&nbsp; probability of identity (PID) in this system was expected to be low based on previous studies of <span  style="font-style: italic;">P. lobata </span>using this marker system. The greatest PID&nbsp; for any site in this study is 5.6 &times; 10<sup>-8</sup> therefore, the expected number of genotypes (G<sub>E</sub>) is equal to the number of colonies genotyped and does not have to be estimated (see Baums <span style="font-style: italic;">et al.</span> 2006). Observed genotypic diversity, G<sub>O</sub>, is calculated by the inverse of the sum of the square of ni&nbsp; (the number of individuals of genotype i found in the total number of samples) divided by&nbsp; N.&nbsp; If&nbsp; the&nbsp; colonies&nbsp; in&nbsp; the&nbsp; population&nbsp; are all sexually produced G<sub>O</sub>&nbsp; will be equal to N. Therefore,&nbsp; genotypic&nbsp; diversity&nbsp; is&nbsp; maximized in a solely sexual population (G<sub>O</sub>/G<sub>E</sub>=1) and approaches zero when all colonies are asexually produced. Lastly, a measure of genotypic evenness is calculated by dividing observed genotypic diversity by the number of unique genotypes&nbsp; (GO/NG).&nbsp; In&nbsp; contrast&nbsp; to&nbsp; richness, evenness is more influenced by genet longevity than recruitment. Evenness will approach zero&nbsp; when&nbsp; the&nbsp; population&nbsp; is&nbsp; dominated&nbsp; by one genotype but will approach 1 when each genotype has an equal number of member colonies (ramets). Simpson&#8217;s corrected diversity (D), and Shannon-Wiener corrected diversity (H), were also calculated for each site using GenoDive (Meirmans &amp; Van Tienderen 2004). Simpson&#8217;s diversity is independent of sample size. However, the Shannon-Wiener index is highly biased by sample size and rarely used for genetic studies except where sample sizes are similar. The genetic diversity was estimated by:&nbsp; the&nbsp; number&nbsp; of&nbsp; alleles&nbsp; (N<sub>A</sub>),&nbsp; number&nbsp; of effective alleles (A<sub>E</sub>), and number of private </font><font style="font-family: verdana;" size="2">alleles&nbsp; (A<sub>P</sub>)&nbsp; and&nbsp; average&nbsp; observed&nbsp; (H<sub>O</sub>)&nbsp; and expected (H<sub>E</sub>) heterozygosity (<a href="/img/revistas/rbt/v60s3/a18t2.gif">Table 2</a>). Each richness, diversity, and evenness index aver-aged over sites within regions was compared between regions (Isla del Coco versus Coastal) using t-tests after checking for equal variance (Levene test, p&gt;0.05) and normality (Shapiro-Wilk, p&gt;0.05). Simpson&#8217;s diversity (D) violated the assumptions of normality and equal variance and thus a non-parametric comparison was performed (Mann Whitney U test).</font>    ]]></body>
<body><![CDATA[<br> <font style="font-family: verdana;" size="2"></font><br  style="font-weight: bold;"> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Characterization&nbsp; of&nbsp; sites:&nbsp;</span> The&nbsp; relation between richness and evenness (G<sub>O</sub>/G<sub>E</sub>&nbsp; vs G<sub>O</sub>/N<sub>G</sub>) characterizes the relative contribution of sexual recruitment and longevity of colonies to population structure and was used to classify each site into three groups (Baums <span style="font-style: italic;">et al.</span> 2006). The first group was characterized by sexual reproduction apparent by the maximization of both indices. The second group was considered to reproduce mainly sexually and the third was dominated by fragmentation as richness and evenness were low. K-means clustering of sites was performed using the squared Euclidian distance of only the uncorrelated (Pearson correlation, corrected p&gt;0.001) diversity estimates: G<sub>O</sub>/G<sub>E</sub>, D, and N<sub>G</sub>/N. Selection of the most&nbsp; likely cluster followed Calinski &amp; Harabasz&#8217; pseudo-F, Akaike&nbsp; Information&nbsp; Criterion,&nbsp; and Bayesian Information Criterion as calculated in GenoDive (Meirmans &amp; Van Tienderen 2004).    <br>     <br> </font><font style="font-family: verdana; font-weight: bold;" size="3">Results</font>    <br> <font style="font-family: verdana;" size="2"></font><br  style="font-weight: bold;"> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Size distribution of colonies:</span> Colony size (m<sup>2</sup>) was estimated by multiplying length and width measurements and resulting sizes were divided into nine uniform 0.5 m<sup>2</sup>&nbsp; size classes ranging from 0-4.5 m<sup>2</sup>. <span style="font-style: italic;">P. lobata </span>colony size was skewed towards small colonies with few large colonies over 4m<sup>2</sup>&nbsp; observed (<a  href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1D</a>). A significantly larger proportion of colonies was found in the smallest size class (0&#8211;0.5m<sup>2</sup>) compared to other size classes (one way ANOVA, post-hoc&nbsp; Tukey&nbsp; test,&nbsp; p&lt;0.001).&nbsp; The&nbsp; proportion of small colonies at Isla del Coco was 66%&nbsp; (SD =&nbsp; 25%). There&nbsp; was&nbsp; no&nbsp; significant difference (t-test; p&gt;0.05) in the size of colonies between regions (Mean-Size<sub>COCO</sub>= 0.63 &plusmn; 0.85m<sup>2</sup>; Mean-Size<sub>COASTAL</sub>= 0.94 &plusmn; 1.20m<sup>2</sup>) or between unique colonies and those belonging to a repeated MLG (Mean-Size<sub>UNIQUE</sub>=0.64 &plusmn; 0.85m<sup>2</sup>; Mean-Size<sub>REPEAT</sub>=1.11 &plusmn; 1.38m2).</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Genotyping:</span> The total number of samples collected at both sites was comparable (n<sub>COCO</sub>=58; n<sub>COASTAL</sub>=60). However, genotyping revealed that many of these samples were actually Porites evermanni&nbsp; (Boulay <span  style="font-style: italic;">et al.</span> in prep)&nbsp; particularly&nbsp; at&nbsp; Isla&nbsp; del&nbsp; Ca&ntilde;o&nbsp; where&nbsp; P. evermanni&nbsp; samples&nbsp;&nbsp; composed&nbsp; over&nbsp; half&nbsp; of the collection&nbsp; (n=31). Because this study was designed to describe population genetic structure of <span style="font-style: italic;">Porites</span> on Isla del Coco, and <span style="font-style: italic;">P. lobata </span>is the dominant <span style="font-style: italic;">Porites</span> on this island, the following&nbsp; results focus on <span style="font-style: italic;">P. lobata </span>only. Genotype assignments were given to all <span  style="font-style: italic;">P. lobata </span>samples collected from Isla del Coco (n=57) and Isla del Ca&ntilde;o (n=29). Amplification resulted in an overall average failure of 6% (SD=7%) at Isla del Coco and 3% (4%) at the coastal/mainland sites, and a per locus failure rate of &lt;16% for each locus in the included samples. No individual was missing data at more than two loci. At total of 48 of the 86 individuals had complete multi-locus genotypes at all loci. The probability of identity (P<sub>ID</sub>) for 11 microsatellite loci applied here ranged from 8.9x10<sup><sub>-9</sub></sup> at Punta Mar&iacute;a to 5.6x10<sup>-8</sup> at Ca&ntilde;o1 (<a href="/img/revistas/rbt/v60s3/a18t2.gif">Table 2</a>). Thus, the power to distinguish between similar but nonidentical multi-locus genotypes was high. Further, the P<sub>ID</sub>&nbsp; when only 9 loci were considered was also sufficiently small to justify inclusion of individuals with missing data (PID<sub>COCO</sub> = 6.7 &times; 10<sup>-7</sup>; P<sub>IDCOASTAL</sub> = 4.3 &times; 10<sup>-7</sup>).</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">The contribution of fragmentation to population structure:</span> At Isla del Coco, the analysis of 57 samples resulted in 54 unique multi-locus genotypes (genets); indicating that sexual reproduction is the main reproductive strategy on this island. The three repeated MLGs consisted of only two ramets per genet each and ramets were always confined to a single sampling plot. The range of separation between the clonemates was from 1 to 7 m. Every colony (n=20) at the deepest of the three sites, Punta Mar&iacute;a, represented a unique MLG (<a  href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1C</a>). At Punta Ulloa (n=17), two ramets were found separated by a distance of less than 0.5 m (<a href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1C</a>). At Bah&iacute;a Weston (n=20), fragmentation was observed in the largest two colonies in the plot (<a  href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1C</a>); one pair of ramets was separated by 6.69 m and another pair separated by a distance of 2.14 m (<a href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1C</a>).</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">At the coastal sites there were 22 unique genotypes out of the 29 <span style="font-style: italic;">Porites lobata</span> samples. In repeated MLGs, the number of ramets per genet ranged from two at Ca&ntilde;o5 (n=11) to four at Ca&ntilde;o2 (n=10) (<a href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1B</a>). At Ca&ntilde;o1 (n=8)&nbsp; all&nbsp; colonies&nbsp; were&nbsp; unique&nbsp; (<a href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig.&nbsp; 1B</a>). At&nbsp; Ca&ntilde;o5&nbsp; (<a href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig.&nbsp; 1B</a>)&nbsp; ramets&nbsp; were&nbsp; separated by a distance of less than 3m but at Ca&ntilde;o2, ramets were distributed over distances up to 15.7m; <a href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1B</a>). At Ca&ntilde;o5 fragmentation was observed (<a href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1B</a>) due to partial mortality or fission of a large colony; but, at the shallower Ca&ntilde;o2, some of the smallest colonies were asexually produced (<a  href="/img/revistas/rbt/v60s3/a18i1.jpg">Fig. 1B</a>) and distributed over greater distances suggesting propagation of small rolling fragments.</font>    ]]></body>
<body><![CDATA[<br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">In&nbsp; summary,&nbsp; genotypic&nbsp; diversity&nbsp; at&nbsp; Isla del Coco sites was high with indices ranging from 0.83 to 1.0 (<a  href="/img/revistas/rbt/v60s3/a18t1.gif">Table 1</a>). Variability among sites was low with one standard deviation ranging&nbsp; from&nbsp; 1&nbsp; to&nbsp; 8%. At&nbsp; the&nbsp; coastal&nbsp; sites, genotypic diversity indices were not on average different to those observed at Isla del Coco (between 0.36 and 1.0) but variance was higher (p=0.006, Simpson&#8217;s D). Only Shannon-Weiner diversity was significantly different between Isla del Coco and the coastal sites likely due to its strong dependence on sample size (<a  href="/img/revistas/rbt/v60s3/a18i2.jpg">Fig. 2A</a>).</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Genetic diversity: </span>Colonies at Isla del Coco carried 4.67 &plusmn; 0.32 alleles per locus (2.83&plusmn;0.10 effective alleles) versus 4.09 &plusmn; 0.64 alleles per locus at the coastal sites (<a  href="/img/revistas/rbt/v60s3/a18i2.jpg">Fig. 2B</a>). Mean observed heterozygosity across sites was 0.53 &plusmn; 0.03 (<a  href="/img/revistas/rbt/v60s3/a18i2.jpg">Fig. 2B</a>). Punta Mar&iacute;a exhibited a relatively high number of private alleles (0.73) per locus while Punta Ulloa, Bah&iacute;a Weston and the coastal sites had fewer than 0.36 private alleles&nbsp; per&nbsp; locus&nbsp; (<a href="/img/revistas/rbt/v60s3/a18t2.gif">Table&nbsp; 2</a>).&nbsp; No&nbsp; differences were observed between the coastal island and oceanic Isla del Coco for any genetic diversity index (<a href="/img/revistas/rbt/v60s3/a18i2.jpg">Fig. 2B</a>).</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2"><span  style="font-weight: bold;">Characterization of sites:</span> K-means clustering based on the relationship between genotypic richness and evenness of sites resulted in three clusters (<a href="/img/revistas/rbt/v60s3/a18i3.jpg">Fig. 3</a>). Punta Mar&iacute;a and Ca&ntilde;o1 clustered together as entirely sexual. Bah&iacute;a Weston, Punta Ulloa, and Ca&ntilde;o5 formed a second cluster and are mostly sexual. Ca&ntilde;o2 is distinct from the remaining sites and was dominated by fragmentation (<a href="/img/revistas/rbt/v60s3/a18i3.jpg">Fig. 3</a>).</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana; font-weight: bold;" size="3">Discussion</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">The relative contributions of asexual and sexual recruitment to local population structure of coral species influences how coral populations recover from large scale disturbance events&nbsp; and&nbsp; what&nbsp; consequences&nbsp; such&nbsp; events have on the genetic diversity of the species. Recovery from sexual recruits would increase the&nbsp; genetic&nbsp; and&nbsp; genotypic&nbsp; diversity&nbsp; whereas recovery from regrowth can only preserve existing genotypic&nbsp; diversity. Without&nbsp; genetic markers, it is difficult to distinguish between these two recovery models because small colony sizes are indicative of sexual recruitment of coral larvae as well as regrowth from remnant tissue of colonies that have suffered partial&nbsp; mortality&nbsp; (Miller&nbsp; <span  style="font-style: italic;">et&nbsp; al.</span>&nbsp; 2007).&nbsp; Here, we demonstrate a high contribution of sexual reproduction to population maintenance for the framework building coral, <span style="font-style: italic;">Porites lobata</span>, on recovering reefs at coastal and oceanic sites. This result gives a genetic basis to argue that recovery from recent (1982-83 and 1996-97) severe&nbsp; disturbance&nbsp; events&nbsp; proceeded&nbsp; chiefly via sexual recruitment and is concurrent with data demonstrating high sexual recruitment of <span style="font-style: italic;">Pocillopora</span> in the ETP (Flot <span  style="font-style: italic;">et al.</span> 2010, Combosch &amp; Vollmer 2011, Pinz&oacute;n &amp; Lajeunesse 2011). This is encouraging because it implies adult coral population densities high enough to generate sexual larvae as well as favorable conditions for survival of young recruits leading to the establishment of genetically diverse and thus more resilient populations. </font>    ]]></body>
<body><![CDATA[<br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">Sexual recruits can be of local or distant origin. An analysis of population structure in <span style="font-style: italic;">P. lobata </span>across the entire Pacific basin suggests a biophysical barrier restricting gene flow between central and eastern Pacific populations. However, no further substructure was shown&nbsp; among&nbsp; <span style="font-style: italic;">P.&nbsp; lobata&nbsp;</span> sampled&nbsp; from&nbsp; ten ETP locations,&nbsp; including&nbsp; Isla&nbsp; del&nbsp; Coco,&nbsp; Isla del Ca&ntilde;o, mainland Costa Rica and the Galapagos archipelago (Baums <span style="font-style: italic;">et al.</span> 2012). It is thus&nbsp; likely&nbsp; that&nbsp; the&nbsp; local&nbsp; population&nbsp; at&nbsp; Isla del&nbsp; Coco&nbsp; is&nbsp; recruiting&nbsp; from&nbsp; other&nbsp; ETP sites such as the Galapagos Islands, mainland Costa Rica, or Panama, in addition to local larval production (Baums <span  style="font-style: italic;">et al.</span> 2012). Similarly high connectivity&nbsp; among&nbsp; populations&nbsp; was&nbsp; evident in two Pocillopora species within the ETP (Pinz&oacute;n&nbsp; &amp;&nbsp; Lajeunesse&nbsp; 2011).&nbsp; ENSO&nbsp; events in the ETP can cause large-scale disturbances with wide-spread adult coral mortality but apparently local populations at coastal and remote oceanic sites receive larval subsidies that aid in recovery.</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">The genetic evidence presented here suggests that fragmentation and reattachment of fragments occurs at low frequency in <span  style="font-style: italic;">P. lobata </span>at Isla del Coco even in large colonies (&gt;2.5m2). Evidence&nbsp; of&nbsp; limited&nbsp; asexual&nbsp; reproduction&nbsp; at Isla del Coco is congruent with findings for <span style="font-style: italic;">P. lobata </span>populations across the Hawaiian Archipelago (Polato <span style="font-style: italic;">et al.</span> 2010) as well as <span style="font-style: italic;">P. damicornis</span> populations at scales over 5m along the Panamanian coast (Combosch &amp; Vollmer 2011), Clipperton Atoll (Flot <span style="font-style: italic;">et al.</span> 2010) and across the ETP (Pinz&oacute;n &amp; Lajeunesse 2011). In&nbsp; the&nbsp; few&nbsp; instances&nbsp; of&nbsp; clonal&nbsp; reproduction at Bah&iacute;a Weston and Ca&ntilde;o5, large colonies likely survived the recent ENSO events but underwent partial mortality and fragmented as suggested by Guzman and Cort&eacute;s (2007) and supported here by genetic evidence.</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">While average diversity did not differ between the oceanic and coastal islands, variability in the prevalence of clonal genotypes among sites was increased at the more environmentally variable coastal sites compared to the oceanic sites. Similar high variance in the contribution of asexual reproduction to population maintenance was observed at coastal sites in Mexico for <span  style="font-style: italic;">Pocillopora</span> Type I (Pinz&oacute;n <span style="font-style: italic;">et al.</span> 2012). In massive corals, the only data for asexual reproduction comes from analyses of clonal structure in <span style="font-style: italic;">Montastrea annularis </span>in the Caribbean. There, we also see variation in the contribution of asexual reproduction to population maintenance with some sites dominated by clones. However this system differs from <span style="font-style: italic;">Porites</span> because fragmentation is driven mainly by abiotic patterns of hurricane frequencies (Foster <span style="font-style: italic;">et al.</span> in review).</font>    <br> <font style="font-family: verdana;" size="2"></font>    <br> <font style="font-family: verdana;" size="2">This is in contrast to the mainly biotic factors&nbsp; controlling&nbsp; fragmentation&nbsp; observed in the ETP. The curious mode of triggerfishinduced fragmentation warrants future studies aimed&nbsp; at&nbsp; comparing&nbsp; the&nbsp; influence&nbsp; of&nbsp; mussels and triggerfish on coral fragmentation between regions in the ETP. Variation in the contribution of asexual and sexual recruitment to population maintenance may be related to variation in the distributions of the triggerfish species and the boring mussels on which they specialize. One ETP endemic triggerfish species, which specializes on endolithic bivales at Isla del Ca&ntilde;o (Guzman &amp; Cort&eacute;s 1989), was&nbsp; found&nbsp; in&nbsp; biogeographic&nbsp; surveys&nbsp; at&nbsp; Isla del Ca&ntilde;o to be at moderate abundance (8.4 individuals/hectare; Guzman 1988) particularly at the base of the reef but, has not been recorded at the major offshore islands such as Isla del Coco (Berry &amp; Baldwin 1966). To understand the mechanisms controlling diversity in this system, further sampling for coral clonal structure and surveying for abundance of triggerfish and mussels will be required across the range of the coral, triggerfish, and mussels in the ETP and should be augmented with deployment of settlement plates.&nbsp;&nbsp; This knowledge of how coral populations persist in marginal habitats will provide insights for conservation of the existing diversity and preserving resilience on coral reefs.</font>    <br> <font style="font-family: verdana;" size="2"></font><br  style="font-weight: bold;"> <font style="font-family: verdana; font-weight: bold;" size="2"></font><font  style="font-family: verdana; font-weight: bold;" size="3">Acknowledgments</font>    <br> <font style="font-family: verdana;" size="2"></font>    ]]></body>
<body><![CDATA[<br> <font style="font-family: verdana;" size="2">We thank the government of Costa Rica for&nbsp;&nbsp; facilitating&nbsp;&nbsp; research&nbsp;&nbsp; permits&nbsp;&nbsp; through SINAC and ACMIC. We appreciate the logistical support to facilitate fieldwork provided by CIMAR. This research was supported by NSF grant OCE-0550294 to IBB and grants from the Vicerrector&iacute;a de Investigaci&oacute;n (UCR) and CONARE to JC.</font>    <br> <hr style="width: 100%; height: 2px;"><font  style="font-family: verdana; font-weight: bold;" size="3">References</font>    <br> <font style="font-family: verdana;" size="2"></font>    <!-- ref --><br> <font style="font-family: verdana;" size="2">Arnaud-Haond, S. &amp; K. Belkhir. 2007. Genclone: a computer program to analyse genotypic data, test for clonality and describe spatial clonal organization. Mol. Ecol. Notes 7: 15-17.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1792912&pid=S0034-7744201200080001800001&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></font>    <br> <font style="font-family: verdana;" size="2"></font>    <!-- ref --><br> <font style="font-family: verdana;" size="2">Bakus, G.J. 1975. Marine zonation and ecology of Cocos Island,&nbsp; off Central America. Atoll Res.&nbsp; Bull. 179: 1-11.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1792915&pid=S0034-7744201200080001800002&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></font>    <br> <font style="font-family: verdana;" size="2"></font>    <!-- ref --><br> <font style="font-family: verdana;" size="2">Baums, I.B., M.W. Miller &amp; M.E. Hellberg. 2006. Geographic variation in clonal&nbsp; structure in a reef building Caribbean&nbsp; coral, <span style="font-style: italic;">Acropora palmata</span>. Ecol. Monogr. 76: 503-519.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1792918&pid=S0034-7744201200080001800003&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></font>    <br> <font style="font-family: verdana;" size="2"></font>    <!-- ref --><br> <font style="font-family: verdana;" size="2">Baums,&nbsp; I.B. 2008. A restoration genetics&nbsp; guide for coral reef conservation. Mol. Ecol. 17: 2796-2811.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1792921&pid=S0034-7744201200080001800004&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></font>    <br> <font style="font-family: verdana;" size="2"></font>    <!-- ref --><br> <font style="font-family: verdana;" size="2">Baums, I.B., J.N. Boulay, N.R. Polato &amp; M.&nbsp; Hellberg. 2012. No gene flow across the Eastern Pacific Barrier in the reef-building coral <span style="font-style: italic;">Porites lobata</span>. Mol. Ecol. doi: 10.1111/j.1365-294X.2012.05733.x.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1792924&pid=S0034-7744201200080001800005&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></font>    <br> <font style="font-family: verdana;" size="2"></font>    <!-- ref --><br> <font style="font-family: verdana;" size="2">Berry, F.H. &amp; W.J. Baldwin. 1966.&nbsp; Triggerfishes (Balistidae) of the eastern&nbsp; Pacific. Proc. Calif. Acad. Sci. 34: 429-474.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1792927&pid=S0034-7744201200080001800006&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></font>    ]]></body>
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<body><![CDATA[<!-- ref --><br> <font style="font-family: verdana;" size="2">Polato, N.R., G.T. Concepcion, R.J. Toonen &amp; I.B. Baums. 2010. Isolation by distance across the&nbsp;&nbsp; Hawaiian Archipelago in the reef-building coral <span style="font-style: italic;">Porites lobata</span>. Mol. Ecol. 19: 4661-4677.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1793029&pid=S0034-7744201200080001800041&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --><br>     <!-- ref --><br> </font><font style="font-family: verdana;" size="2">Polidoro, B.A., T. Brooks, K.E. Carpenter, G.J. Edgar, S. Henderson,&nbsp; J. Sanciangco &amp; D.R.&nbsp; Robertson. 2012. Patterns of extinction risk and threat for marine vertebrates&nbsp; and&nbsp; habitat-forming species in the Tropical Eastern Pacific. Mar. Ecol. Prog. Ser. 448: 93-104.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1793031&pid=S0034-7744201200080001800042&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></font>    <br> <font style="font-family: verdana;" size="2"></font>    <!-- ref --><br> <font style="font-family: verdana;" size="2">Reusch, T.B.H., A. Ehlers, A. Hammerli &amp; B. Worm. 2005. Ecosystem recovery after climatic extremes enhanced by genotypic diversity. Proc. Natl. Acad. Sci. U.S.A. 102: 2826-2831.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1793034&pid=S0034-7744201200080001800043&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></font>    <br> <font style="font-family: verdana;" size="2"></font>    <!-- ref --><br> <font style="font-family: verdana;" size="2">Stoddart,&nbsp; J.A. 1984a. Genetical structure&nbsp; within populations of the coral <span style="font-style: italic;">Pocillopora damicornis</span>. Mar. Biol. 81: 19-30.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1793037&pid=S0034-7744201200080001800044&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --></font>    ]]></body>
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<body><![CDATA[<!-- ref --><br> <font style="font-family: verdana;" size="2">Wells, S.M. 1988. Coral Reefs of the World.&nbsp; Volume 1: Atlantic and Eastern Pacific.&nbsp; United Nations Environment&nbsp; Programme&nbsp; / International Union for&nbsp; Conservation of Nature and Natural&nbsp; Resources, Gland, Switzerland.    &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;[&#160;<a href="javascript:void(0);" onclick="javascript: window.open('/scielo.php?script=sci_nlinks&ref=1793049&pid=S0034-7744201200080001800048&lng=','','width=640,height=500,resizable=yes,scrollbars=1,menubar=yes,');">Links</a>&#160;]<!-- end-ref --> </font>    <br> <font style="font-family: verdana;" size="2">&nbsp;     <br> <a name="Correspondencia1"></a><a href="#Correspondencia2">*</a>Correspodencia a:    <br> </font><font style="font-family: verdana;" size="2">Jennifer N. Boulay. </font><font style="font-family: verdana;" size="2">Department of Biology, The Pennsylvania State University, 208 Mueller Laboratory, University Park, Pennsylvania 16802, USA; jnb186@psu.edu</font>    <br> <font style="font-family: verdana;" size="2">Jorge Cort&eacute;s. </font><font  style="font-family: verdana;" size="2">Centro de Investigaci&oacute;n en Ciencias del Mar y Limnolog&iacute;a (CIMAR), Universidad de Costa Rica, San Pedro, 11501-2060 San Jos&eacute;, Costa Rica; jorge.cortes@ucr.ac.cr</font>    <br> <font style="font-family: verdana;" size="2">Jaime Nivia-Ruiz. </font><font  style="font-family: verdana;" size="2">Centro de Investigaci&oacute;n en Ciencias del Mar y Limnolog&iacute;a (CIMAR), Universidad de Costa Rica, San Pedro, 11501-2060 San Jos&eacute;, Costa Rica.</font>    <br> <font style="font-family: verdana;" size="2">Iliana B. Baums. </font><font  style="font-family: verdana;" size="2">Department of Biology, The Pennsylvania State University, 208 Mueller Laboratory, University Park, Pennsylvania 16802, USA.    <br> </font><font style="font-family: verdana;" size="2"><a name="1"></a><a  href="#3">1</a>.&nbsp; Department of Biology, The Pennsylvania State University, 208 Mueller Laboratory, University Park, Pennsylvania 16802, USA; jnb186@psu.edu</font>    <br> <font style="font-family: verdana;" size="2"><a name="2"></a><a  href="#4">2</a>.&nbsp; Centro de Investigaci&oacute;n en Ciencias del Mar y Limnolog&iacute;a (CIMAR), Universidad de Costa Rica, San Pedro, 11501- 2060 San Jos&eacute;, Costa Rica; jorge.cortes@ucr.ac.cr</font>    ]]></body>
<body><![CDATA[<br>     <div style="text-align: center;"><font style="font-family: verdana;"  size="2"><span style="font-weight: bold;"></span></font> <hr style="width: 100%; height: 2px;"><font  style="font-family: verdana;" size="2"><span style="font-weight: bold;">Received 02-III-2012. Corrected 25-IX-2012. Accepted 29-IX-2012</span> </font></div> </div>      ]]></body><back>
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